instrument-data-to-allotrope Skill
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full AS Published by anthropics in life-sciences.
What is instrument-data-to-allotrope Skill?
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full AS Published by anthropics in life-sciences. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Data analysis
- Data analysis use cases
Technical details
- Install or run with Copy skill directory
When to use instrument-data-to-allotrope Skill
- Use it for data analysis.
Built with
Editorial notes
Source
- Creator: anthropics
- Repository: anthropics/life-sciences
- Skill file: instrument-data-to-allotrope/SKILL.md
What it does
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full AS
Skill instructions
Instrument Data to Allotrope Converter Convert instrument files into standardized Allotrope Simple Model (ASM) format for LIMS upload, data lakes, or handoff to data engineering teams. Note: This is an Example Skill This skill demonstrates how skills can support your data engineering tasks—automating schema transformations, parsing instrument outputs, and generating production-ready code. To customize for your organization: - Modify the references/ files to include your company's specific schemas or ontology mappings - Use an MCP server to connect to systems that define your schemas (e.g., your LIMS, data catalog, or schema registry) - Extend the scripts/ to handle proprietary instrument formats or internal data standards This pattern can be adapted for any data transformation workflow where you need to convert between formats or validate against organizational standards. Workflow Overview 1. Detect instrument type from file contents (auto-detect or user-specified) 2. Parse file using
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Frequently asked questions
What is instrument-data-to-allotrope?
instrument-data-to-allotrope is a open-source AI agent skill with Copy skill directory. Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV.
Who is instrument-data-to-allotrope best for?
instrument-data-to-allotrope is best for reusing agent instructions, scripts, and references, data analysis workflows.
How do I install instrument-data-to-allotrope?
Install or run instrument-data-to-allotrope using Copy skill directory. Check instrument-data-to-allotrope for the latest setup command.
Is instrument-data-to-allotrope actively maintained?
instrument-data-to-allotrope may need a closer maintenance check before production use.
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