bioSkills
bioSkills is a Python AI agent skill for Codex with uvx/pip, git clone. a set of SKILLS.md for doing bioinformatics with agents like claude code
How to use bioSkills
Install or run
pip install biopython pysam cyvcf2 pybedtools pyBigWig scikit-allel anndata mygeneCompatible clients
What is bioSkills?
bioSkills is a Python AI agent skill for Codex with uvx/pip, git clone. a set of SKILLS.md for doing bioinformatics with agents like claude code This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Reusable instructions support
- Includes SKILL.md support
- Shell commands support
- Browser use support
- Spreadsheet work support
- Document generation support
- OpenAI provider support
Technical details
Install or run bioSkills using uvx/pip. Check GPTomics/bioSkills for the latest setup command.
- Built for Python
- Built for Rust
- Install or run with uvx/pip
- Install or run with git clone
- Works with Codex
- Uses SSE transport
- API key required
- Database access
Requirements and access
Security and permissions
Review permissions before connecting any MCP server to an agent. Pay special attention to whether it can read local files, write data, call external services, or perform destructive actions.
When to use bioSkills
- Use it for reusing agent instructions, scripts, and references.
- Use it for agent skills workflows.
- Use it for coding workflows.
- Use it for data workflows.
- Use it for codex users.
Built with
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Frequently asked questions
What is bioSkills?
bioSkills is a Python AI agent skill for Codex with uvx/pip, git clone. a set of SKILLS.md for doing bioinformatics with agents like claude code
Who is bioSkills best for?
bioSkills is best for reusing agent instructions, scripts, and references, agent skills workflows, coding workflows, data workflows, codex users.
How do I install bioSkills?
Install or run bioSkills using uvx/pip. Check bioSkills for the latest setup command.
Is bioSkills actively maintained?
bioSkills may need a closer maintenance check before production use.
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