bindingdb-skill
Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request. Published by openai in plugins.
What is bindingdb-skill?
Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request. Published by openai in plugins. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Documentation
- Design and media
- Research
- Documentation use cases
- Design and media use cases
Technical details
- Install or run with Copy skill directory
When to use bindingdb-skill
- Use it for documentation.
- Use it for design and media.
- Use it for research.
Built with
Editorial notes
Source
- Creator: openai
- Repository: openai/plugins
- Skill file: plugins/life-science-research/skills/bindingdb-skill/SKILL.md
What it does
Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request.
Skill instructions
Operating rules - Use scripts/restrequest.py for all BindingDB API calls. - Use baseurl=https://bindingdb.org. - Add response=application/json in params when you want structured output; some empty-result cases may still return an empty body. - For broad lookup endpoints, start around maxitems=10; similarity-style queries are better with 5-10. - Re-run requests in long conversations instead of relying on older tool output. - Treat displayed ... in tool previews as UI truncation, not literal request content. Execution behavior - Return concise markdown summaries from the script JSON by default. - Prefer these paths: rest/getLigandsByPDBs, rest/getLigandsByUniprots, rest/getLigandsBySmiles, and rest/getTargetsByCompound. - If the user needs the full payload, set saveraw=true and report the saved file path instead of pasting large response bodies into chat. Input - Read one JSON object from stdin. - Required fields: baseurl, path - Optional fields: method, params, headers, jsonbody, formbo
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Frequently asked questions
What is bindingdb-skill?
bindingdb-skill is a open-source AI agent skill with Copy skill directory. Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. Use when a user wants concise BindingDB summaries; save raw payloads only on request.
Who is bindingdb-skill best for?
bindingdb-skill is best for reusing agent instructions, scripts, and references, documentation workflows, design and media workflows, research workflows.
How do I install bindingdb-skill?
Install or run bindingdb-skill using Copy skill directory. Check bindingdb-skill for the latest setup command.
Is bindingdb-skill actively maintained?
bindingdb-skill may need a closer maintenance check before production use.
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