cbioportal-skill
Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. Use when a user wants concise cBioPortal summaries Published by openai in plugins.
What is cbioportal-skill?
Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. Use when a user wants concise cBioPortal summaries Published by openai in plugins. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Documentation
- Data analysis
- Design and media
- Documentation use cases
- Data analysis use cases
Technical details
- Install or run with Copy skill directory
When to use cbioportal-skill
- Use it for documentation.
- Use it for data analysis.
- Use it for design and media.
Built with
Editorial notes
Source
- Creator: openai
- Repository: openai/plugins
- Skill file: plugins/life-science-research/skills/cbioportal-skill/SKILL.md
What it does
Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. Use when a user wants concise cBioPortal summaries
Skill instructions
Operating rules - Use scripts/restrequest.py for all cBioPortal API calls. - Use baseurl=https://www.cbioportal.org/api. - Collection endpoints are better with pageSize=10 and maxitems=10; single study or profile lookups usually do not need maxitems. - Use method=POST plus jsonbody for fetch-style endpoints such as mutation fetches. - Send Accept: application/json in headers. - Re-run requests in long conversations instead of relying on older tool output. - Treat displayed ... in tool previews as UI truncation, not literal request content. Execution behavior - Return concise markdown summaries from the script JSON by default. - Prefer these paths: studies, studies/<studyId/molecular-profiles, molecular-profiles/<profileId/mutations/fetch, and study-level clinical or sample endpoints. - If the user needs the full payload, set saveraw=true and report the saved file path. Input - Read one JSON object from stdin. - Required fields: baseurl, path - Optional fields: method, params, headers,
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Frequently asked questions
What is cbioportal-skill?
cbioportal-skill is a open-source AI agent skill with Copy skill directory. Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. Use when a user wants concise cBioPortal summaries
Who is cbioportal-skill best for?
cbioportal-skill is best for reusing agent instructions, scripts, and references, documentation workflows, data analysis workflows, design and media workflows.
How do I install cbioportal-skill?
Install or run cbioportal-skill using Copy skill directory. Check cbioportal-skill for the latest setup command.
Is cbioportal-skill actively maintained?
cbioportal-skill may need a closer maintenance check before production use.
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