finngen-phewas-skill
Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise FinnGen association results for one variant Published by openai in plugins.
What is finngen-phewas-skill?
Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise FinnGen association results for one variant Published by openai in plugins. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Documentation
- Design and media
- Documentation use cases
- Design and media use cases
Technical details
- Install or run with Copy skill directory
When to use finngen-phewas-skill
- Use it for documentation.
- Use it for design and media.
Built with
Editorial notes
Source
- Creator: openai
- Repository: openai/plugins
- Skill file: plugins/life-science-research/skills/finngen-phewas-skill/SKILL.md
What it does
Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise FinnGen association results for one variant
Skill instructions
Operating rules - Use scripts/finngenphewas.py for all FinnGen PheWAS lookups. - Accept exactly one of rsid, grch37, grch38, or variant; resolve to the canonical GRCh38 chr:pos-ref-alt query before calling FinnGen. - The script accepts maxresults; start with maxresults=10 and only increase it if the first slice is insufficient. - Re-run the lookup in long conversations instead of relying on older tool output. - Treat displayed ... in tool previews as UI truncation, not literal request content. - If the user needs the full association payload, set saveraw=true and report rawoutputpath instead of pasting large arrays into chat. Execution behavior - Return concise markdown summaries from the script JSON by default. - Return the JSON verbatim only if the user explicitly asks for machine-readable output. - Surface the canonical queried variant, total association count, truncation status, and any returned regions. - Increase maxresults gradually instead of asking for large association dumps
Explore related resources
Frequently asked questions
What is finngen-phewas-skill?
finngen-phewas-skill is a open-source AI agent skill with Copy skill directory. Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query.
Who is finngen-phewas-skill best for?
finngen-phewas-skill is best for reusing agent instructions, scripts, and references, documentation workflows, design and media workflows.
How do I install finngen-phewas-skill?
Install or run finngen-phewas-skill using Copy skill directory. Check finngen-phewas-skill for the latest setup command.
Is finngen-phewas-skill actively maintained?
finngen-phewas-skill may need a closer maintenance check before production use.
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