ngs-analysis-router Skill
Route BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions. Published by openai in plugins.
What is ngs-analysis-router Skill?
Route BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions. Published by openai in plugins. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Data analysis
- Design and media
- Data analysis use cases
- Design and media use cases
Technical details
- Install or run with Copy skill directory
When to use ngs-analysis-router Skill
- Use it for data analysis.
- Use it for design and media.
Built with
Editorial notes
Source
- Creator: openai
- Repository: openai/plugins
- Skill file: plugins/ngs-analysis/skills/ngs-analysis-router/SKILL.md
What it does
Route BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions.
Skill instructions
Life Sciences NGS Analysis Router Use this skill as the top-level entrypoint for ambiguous or broad sequencing-analysis requests. Start Here Inspect the available inputs before asking the user questions. Look for: - Illumina run-folder files: RunInfo.xml, RunParameters.xml, SampleSheet.csv, Data/Intensities/BaseCalls - FASTQs: .fastq, .fq, .fastq.gz, .fq.gz - BAM/CRAM/VCF: .bam, .cram, .vcf, .vcf.gz - count matrices: matrix.mtx, features.tsv, barcodes.tsv, .h5, .h5ad, .rds - metadata: sample sheets, design files, target BEDs, reference FASTA/GTF, primer files Read references/intake-schema.json and references/pipeline-registry.json when forming the route. Intake Rules Ask the smallest set of missing questions needed to choose a defensible pipeline. Do not ask the full questionnaire if file inspection already answers a field. Always resolve: - input type - assay type - desired output - organism/reference - paired-end vs single-end when FASTQs are involved - any assay-specific design file
Explore related resources
Frequently asked questions
What is ngs-analysis-router?
ngs-analysis-router is a open-source AI agent skill with Copy skill directory. Route BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions.
Who is ngs-analysis-router best for?
ngs-analysis-router is best for reusing agent instructions, scripts, and references, data analysis workflows, design and media workflows.
How do I install ngs-analysis-router?
Install or run ngs-analysis-router using Copy skill directory. Check ngs-analysis-router for the latest setup command.
Is ngs-analysis-router actively maintained?
ngs-analysis-router may need a closer maintenance check before production use.
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