ngs-epigenomics-peaks Skill
Dispatch ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag requests to assay-specific QC, alignment, signal-track, peak-calling, consensus, and differential peak workflows. Published by openai in plugins.
What is ngs-epigenomics-peaks Skill?
Dispatch ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag requests to assay-specific QC, alignment, signal-track, peak-calling, consensus, and differential peak workflows. Published by openai in plugins. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Data analysis
- Data analysis use cases
Technical details
- Install or run with Copy skill directory
When to use ngs-epigenomics-peaks Skill
- Use it for data analysis.
Built with
Editorial notes
Source
- Creator: openai
- Repository: openai/plugins
- Skill file: plugins/ngs-analysis/skills/ngs-epigenomics-peaks/SKILL.md
What it does
Dispatch ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag requests to assay-specific QC, alignment, signal-track, peak-calling, consensus, and differential peak workflows.
Skill instructions
Epigenomics Peaks Use this skill as the epigenomics dispatcher for ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag analysis. Hand off to the assay-specific deep skill once the assay type is known. Essential Inputs Confirm: - assay type - FASTQ or BAM input - organism and genome build - blacklist file, if available - control samples: input DNA, IgG, or spike-in - biological replicates - peak type: narrow, broad, accessibility, or protocol-specific - desired outputs: QC report, peaks, consensus peaks, bigWigs, differential peaks Public Defaults Choose the workflow by assay: - ATAC-seq: ngs-atacseq-peaks-qc using nf-core/atacseq by default - ChIP-seq: ngs-chip-cutrun-peaks-qc using nf-core/chipseq by default - CUT&RUN or CUT&Tag: ngs-chip-cutrun-peaks-qc using nf-core/cutandrun by default Use direct MACS2 only for focused peak-calling tasks from prepared BAMs. Preflight bash python plugins/ngs-analysis/scripts/ngspreflight.py --pipeline epigenomicspeaks --emit-install-plan Local Execution Package
Explore related resources
Frequently asked questions
What is ngs-epigenomics-peaks?
ngs-epigenomics-peaks is a open-source AI agent skill with Copy skill directory. Dispatch ATAC-seq, ChIP-seq, CUT&RUN, or CUT&Tag requests to assay-specific QC, alignment, signal-track, peak-calling, consensus, and differential peak workflows.
Who is ngs-epigenomics-peaks best for?
ngs-epigenomics-peaks is best for reusing agent instructions, scripts, and references, data analysis workflows.
How do I install ngs-epigenomics-peaks?
Install or run ngs-epigenomics-peaks using Copy skill directory. Check ngs-epigenomics-peaks for the latest setup command.
Is ngs-epigenomics-peaks actively maintained?
ngs-epigenomics-peaks may need a closer maintenance check before production use.
Auto-fetched from GitHub.
