ngs-runtime-env Skill
Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline. Published by openai in plugins.
What is ngs-runtime-env Skill?
Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline. Published by openai in plugins. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Data analysis
- Data analysis use cases
Technical details
- Install or run with Copy skill directory
When to use ngs-runtime-env Skill
- Use it for data analysis.
Built with
Editorial notes
Source
- Creator: openai
- Repository: openai/plugins
- Skill file: plugins/ngs-analysis/skills/ngs-runtime-env/SKILL.md
What it does
Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.
Skill instructions
NGS Runtime Environment Use this skill whenever an NGS workflow needs package checks, install planning, or runtime validation. Existence Check Order 1. Check executables on PATH with command -v or shutil.which. 2. Check Python imports for Python-backed tools. 3. Check active package managers with conda list, mamba list, micromamba list, or pip show. 4. If requested, check package indexes or container registries. 5. Emit an install plan before installing. 6. Install only when explicitly requested by the user. Do not modify system Python. Prefer isolated conda/mamba environments or containers. Script From the repo root: bash python plugins/ngs-analysis/scripts/ngspreflight.py --list python plugins/ngs-analysis/scripts/ngspreflight.py --tool fastqc --emit-install-plan python plugins/ngs-analysis/scripts/ngspreflight.py --profile locallight --emit-install-plan python plugins/ngs-analysis/scripts/ngspreflight.py --pipeline dnavariantcalling --network-checks --emit-install-plan python plugin
Explore related resources
Frequently asked questions
What is ngs-runtime-env?
ngs-runtime-env is a open-source AI agent skill with Copy skill directory. Check whether public NGS tools and packages already exist before downloading, installing, or running a sequencing pipeline.
Who is ngs-runtime-env best for?
ngs-runtime-env is best for reusing agent instructions, scripts, and references, data analysis workflows.
How do I install ngs-runtime-env?
Install or run ngs-runtime-env using Copy skill directory. Check ngs-runtime-env for the latest setup command.
Is ngs-runtime-env actively maintained?
ngs-runtime-env may need a closer maintenance check before production use.
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