ngs-bulk-rnaseq Skill
Dispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows. Published by openai in plugins.
Decision snapshot
Is this a fit?
Data analysis, Design and media, Includes SKILL.md, Reusable instructions
Compatibility not yet detected.
Permission behavior not yet detected.
Copy skill directory
19 days ago
No specific cautions were detected. Review the source and requested permissions before installing.
What is ngs-bulk-rnaseq Skill?
Dispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows. Published by openai in plugins. This profile combines repository metadata with install, compatibility, and usage signals so developers can quickly decide whether it fits their agent workflow before opening the source repository.
Automated repository signals based on public metadata such as recency, license, installation evidence, and adoption. These are not a security audit or endorsement. See how SkillIndex evaluates profiles.
Key capabilities
- Includes SKILL.md support
- Reusable instructions support
- Data analysis
- Design and media
- Data analysis use cases
- Design and media use cases
Declared skill metadata
- Source file: plugins/ngs-analysis/skills/ngs-bulk-rnaseq/SKILL.md
These fields retain source and confidence evidence from the indexed SKILL.md.
Compatibility and setup
- Install or run with Copy skill directory
When to use ngs-bulk-rnaseq Skill
- Use it for data analysis.
- Use it for design and media.
Built with
Editorial notes
Source
- Creator: openai
- Repository: openai/plugins
- Skill file: plugins/ngs-analysis/skills/ngs-bulk-rnaseq/SKILL.md
What it does
Dispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows.
Skill instructions
Bulk RNA-seq Use this skill as the bulk RNA-seq dispatcher. Route FASTQ/BAM processing to count-generation QC, and route count-matrix statistical analysis to differential-expression guidance. Essential Inputs Confirm: - organism and genome build - FASTA and GTF, or supported nf-core genome key - paired-end or single-end reads - strandedness, or whether to infer strandedness - sample sheet and metadata - counts-only vs differential expression - contrasts, covariates, and batch terms for differential expression Dispatch - FASTQ or aligned reads to raw counts, transcript estimates, or MultiQC summaries: ngs-bulk-rnaseq-counts-qc - Raw count matrix plus sample metadata to contrasts, plots, and DE result tables: ngs-bulk-rnaseq-differential-expression If the user asks for both, run count-generation planning first and start differential expression only after the raw count matrix, sample metadata, replicates, design formula, and contrasts are confirmed. Public Default Prefer nf-core/rnaseq fo
Verified compatibility and discovery
Frequently asked questions
What is ngs-bulk-rnaseq?
ngs-bulk-rnaseq is a open-source AI agent skill with Copy skill directory. Dispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows.
Who is ngs-bulk-rnaseq best for?
ngs-bulk-rnaseq is best for reusing agent instructions, scripts, and references, data analysis workflows, design and media workflows.
How do I install ngs-bulk-rnaseq?
Install or run ngs-bulk-rnaseq using Copy skill directory. Check ngs-bulk-rnaseq for the latest setup command.
Is ngs-bulk-rnaseq actively maintained?
ngs-bulk-rnaseq may need a closer maintenance check before production use.
Project health auto-fetched from the source repository.
Maintain this resource?
Review this source-backed profile, send a correction with evidence, or link to it from your documentation. Claims verify your relationship to the project; profile facts still require source evidence and editorial review.
